J4_9H4N_002

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|C|196
9H4N|1|A2|A|197
9H4N|1|A2|A|198
9H4N|1|A2|G|199
*
9H4N|1|A2|C|215
9H4N|1|A2|C|216
9H4N|1|A2|C|217
9H4N|1|A2|A|218
9H4N|1|A2|G|219
9H4N|1|A2|C|220
9H4N|1|A2|C|221
9H4N|1|A2|C|222
*
9H4N|1|A2|G|226
9H4N|1|A2|A|227
9H4N|1|A2|C|228
*
9H4N|1|A2|G|240
9H4N|1|A2|G|241
9H4N|1|A2|U|242
9H4N|1|A2|A|243
9H4N|1|A2|G|244

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain F2

Large ribosomal subunit protein uL4

Chain S2

Large ribosomal subunit protein uL24