J4_9H4N_004

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

(OMC)AAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9H4N|1|A2|A|2121, 9H4N|1|A2|U|2124, 9H4N|1|A2|U|2583

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|OMC|2120
9H4N|1|A2|A|2121
9H4N|1|A2|A|2122
9H4N|1|A2|A|2123
9H4N|1|A2|U|2124
9H4N|1|A2|A|2125
9H4N|1|A2|U|2126
*
9H4N|1|A2|A|2144
9H4N|1|A2|G|2145
9H4N|1|A2|G|2146
*
9H4N|1|A2|C|2579
9H4N|1|A2|A|2580
9H4N|1|A2|U|2581
9H4N|1|A2|G|2582
9H4N|1|A2|U|2583
9H4N|1|A2|U|2584
*
9H4N|1|A2|A|3512
9H4N|1|A2|G|3513

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain J2

60S ribosomal protein L17

Chain L2

Large ribosomal subunit protein eL19

Chain X2

Large ribosomal subunit protein eL31