J4_9H4N_006

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9H4N|1|A2|A|2451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|G|2373
9H4N|1|A2|G|2374
*
9H4N|1|A2|U|2392
9H4N|1|A2|G|2393
9H4N|1|A2|U|2394
9H4N|1|A2|G|2395
9H4N|1|A2|A|2396
9H4N|1|A2|A|2397
*
9H4N|1|A2|U|2447
9H4N|1|A2|G|2448
9H4N|1|A2|G|2449
9H4N|1|A2|A|2450
9H4N|1|A2|A|2451
9H4N|1|A2|A|2452
9H4N|1|A2|G|2453
*
9H4N|1|A2|U|2473
9H4N|1|A2|C|2474

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain L2

Large ribosomal subunit protein eL19

Chain O2

Large ribosomal subunit protein eL22

Chain a2

60S ribosomal protein L34

Chain e2

60S ribosomal protein L38