J4_9H4N_007

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|G|3290
9H4N|1|A2|A|3291
9H4N|1|A2|C|3292
9H4N|1|A2|U|3293
9H4N|1|A2|G|3294
*
9H4N|1|A2|C|3306
9H4N|1|A2|A|3307
9H4N|1|A2|A|3308
9H4N|1|A2|A|3309
9H4N|1|A2|G|3310
*
9H4N|1|A2|U|3346
9H4N|1|A2|G|3347
9H4N|1|A2|A|3348
9H4N|1|A2|U|3349
9H4N|1|A2|U|3350
*
9H4N|1|A2|A|3477
9H4N|1|A2|U|3478
9H4N|1|A2|G|3479
9H4N|1|A2|A|3480
9H4N|1|A2|A|3481
9H4N|1|A2|C|3482

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D2

Large ribosomal subunit protein uL2

Chain h2

Small ribosomal subunit protein eS32

Chain j2

Large ribosomal subunit protein eL43

Chain m2

Small subunit ribosomal RNA; SSU rRNA