J4_9H4N_010

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GGG

Length

16 nucleotides

Bulged bases

9H4N|1|A2|A|3886

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|C|3883
9H4N|1|A2|U|3884
9H4N|1|A2|A|3885
9H4N|1|A2|A|3886
9H4N|1|A2|G|3887
*
9H4N|1|A2|U|3941
9H4N|1|A2|U|3942
9H4N|1|A2|G|3943
9H4N|1|A2|A|3944
9H4N|1|A2|U|3945
*
9H4N|1|A2|A|3969
9H4N|1|A2|C|3970
9H4N|1|A2|C|3971
*
9H4N|1|A2|G|3980
9H4N|1|A2|G|3981
9H4N|1|A2|G|3982

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain G2

Large ribosomal subunit protein uL18

Chain N2

Large ribosomal subunit protein eL21

Chain V2

Large ribosomal subunit protein eL29

Chain i2

Large ribosomal subunit protein eL42