J4_9H9H_002

3D structure

PDB id

9H9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 1 30S-IF1-IF2-IF3-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9H9H|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H9H|1|A|G|115
9H9H|1|A|A|116
9H9H|1|A|G|117
9H9H|1|A|U|118
9H9H|1|A|A|119
9H9H|1|A|A|120
9H9H|1|A|U|121
9H9H|1|A|G|122
*
9H9H|1|A|U|239
9H9H|1|A|G|240
*
9H9H|1|A|C|286
9H9H|1|A|U|287
9H9H|1|A|A|288
9H9H|1|A|G|289
*
9H9H|1|A|C|311
9H9H|1|A|C|312

Current chains

Chain A

16S RNA (1534-MER)

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17