J4_9HA1_005

3D structure

PDB id

9HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9HA1|1|A|G|1341, 9HA1|1|A|A|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HA1_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1235

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9HA1|1|A|G|1310
9HA1|1|A|G|1311
9HA1|1|A|U|1312
9HA1|1|A|U|1313
9HA1|1|A|C|1314
*
9HA1|1|A|G|1338
9HA1|1|A|G|1339
9HA1|1|A|U|1340
9HA1|1|A|G|1341
9HA1|1|A|A|1342
9HA1|1|A|G|1343
*
9HA1|1|A|C|1404
9HA1|1|A|U|1405
*
9HA1|1|A|A|1597
9HA1|1|A|A|1598
9HA1|1|A|U|1599
9HA1|1|A|C|1600
9HA1|1|A|G|1601
9HA1|1|A|U|1602
9HA1|1|A|A|1603
9HA1|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain T

Large ribosomal subunit protein uL23