J4_9HA2_005

3D structure

PDB id

9HA2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Alternative PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9HA2|1|A|G|1341, 9HA2|1|A|A|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HA2_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1235

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9HA2|1|A|G|1310
9HA2|1|A|G|1311
9HA2|1|A|U|1312
9HA2|1|A|U|1313
9HA2|1|A|C|1314
*
9HA2|1|A|G|1338
9HA2|1|A|G|1339
9HA2|1|A|U|1340
9HA2|1|A|G|1341
9HA2|1|A|A|1342
9HA2|1|A|G|1343
*
9HA2|1|A|C|1404
9HA2|1|A|U|1405
*
9HA2|1|A|A|1597
9HA2|1|A|A|1598
9HA2|1|A|U|1599
9HA2|1|A|C|1600
9HA2|1|A|G|1601
9HA2|1|A|U|1602
9HA2|1|A|A|1603
9HA2|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain T

Large ribosomal subunit protein uL23