J4_9HMW_003

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CAAAUAU*AG*CGAU*AG

Length

15 nucleotides

Bulged bases

9HMW|1|A|A|1461, 9HMW|1|A|U|1464, 9HMW|1|A|A|1465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|A|C|1460
9HMW|1|A|A|1461
9HMW|1|A|A|1462
9HMW|1|A|A|1463
9HMW|1|A|U|1464
9HMW|1|A|A|1465
9HMW|1|A|U|1466
*
9HMW|1|A|A|1484
9HMW|1|A|G|1485
*
9HMW|1|A|C|1879
9HMW|1|A|G|1880
9HMW|1|A|A|1881
9HMW|1|A|U|1882
*
9HMW|1|A|A|2350
9HMW|1|A|G|2351

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AK

Large ribosomal subunit protein eL19x

Chain AU

Large ribosomal subunit protein eL31y

Chain BM

Large ribosomal subunit protein uL22z