J4_9HMW_010

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GUG

Length

16 nucleotides

Bulged bases

9HMW|1|A|A|2656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|A|C|2653
9HMW|1|A|U|2654
9HMW|1|A|A|2655
9HMW|1|A|A|2656
9HMW|1|A|G|2657
*
9HMW|1|A|U|2711
9HMW|1|A|U|2712
9HMW|1|A|G|2713
9HMW|1|A|A|2714
9HMW|1|A|U|2715
*
9HMW|1|A|A|2739
9HMW|1|A|C|2740
9HMW|1|A|C|2741
*
9HMW|1|A|G|2750
9HMW|1|A|U|2751
9HMW|1|A|G|2752

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AM

Large ribosomal subunit protein eL21z/eL21y

Chain AR

60S ribosomal protein L29

Chain BD

Large ribosomal subunit protein eL42z/eL42y

Chain BK

Large ribosomal subunit protein uL18z