J4_9HMW_013

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CAU(PSU)AAAUC*GCC*G(PSU)GAC*GG

Length

19 nucleotides

Bulged bases

9HMW|1|h1|G|361

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|C|100
9HMW|1|h1|A|101
9HMW|1|h1|U|102
9HMW|1|h1|PSU|103
9HMW|1|h1|A|104
9HMW|1|h1|A|105
9HMW|1|h1|A|106
9HMW|1|h1|U|107
9HMW|1|h1|C|108
*
9HMW|1|h1|G|309
9HMW|1|h1|C|310
9HMW|1|h1|C|311
*
9HMW|1|h1|G|359
9HMW|1|h1|PSU|360
9HMW|1|h1|G|361
9HMW|1|h1|A|362
9HMW|1|h1|C|363
*
9HMW|1|h1|G|385
9HMW|1|h1|G|386

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain Aa

Small ribosomal subunit protein eS8z

Chain Ja

Small ribosomal subunit protein eS4x

Chain Va

Small ribosomal subunit protein uS12y

Chain Xa

Small ribosomal subunit protein uS17z