J4_9HMW_014

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

AAG*CGAAAG*CCA(PSU)AAACGAUG*(PSU)U

Length

23 nucleotides

Bulged bases

9HMW|1|h1|A|625, 9HMW|1|h1|A|1027, 9HMW|1|h1|C|1029, 9HMW|1|h1|A|1031

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|A|624
9HMW|1|h1|A|625
9HMW|1|h1|G|626
*
9HMW|1|h1|C|976
9HMW|1|h1|G|977
9HMW|1|h1|A|978
9HMW|1|h1|A|979
9HMW|1|h1|A|980
9HMW|1|h1|G|981
*
9HMW|1|h1|C|1022
9HMW|1|h1|C|1023
9HMW|1|h1|A|1024
9HMW|1|h1|PSU|1025
9HMW|1|h1|A|1026
9HMW|1|h1|A|1027
9HMW|1|h1|A|1028
9HMW|1|h1|C|1029
9HMW|1|h1|G|1030
9HMW|1|h1|A|1031
9HMW|1|h1|U|1032
9HMW|1|h1|G|1033
*
9HMW|1|h1|PSU|1104
9HMW|1|h1|U|1105

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AE

Small ribosomal subunit protein uS8z/uS8w

Chain BC

Small ribosomal subunit protein eS32 eS32z/eS32y/eS32x/eS32w/eS32v

Chain Da

Small ribosomal subunit protein uS15y

Chain Ma

Small ribosomal subunit protein eS26y

Chain Ua

Small ribosomal subunit protein uS11y

Chain Va

Small ribosomal subunit protein uS12y

Chain Xa

Small ribosomal subunit protein uS17z