J4_9HMW_015
3D structure
- PDB id
- 9HMW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.25 Å
Loop
- Sequence
- AUAG*CGU*AAGGUCG*CU
- Length
- 16 nucleotides
- Bulged bases
- 9HMW|1|i2|U|8, 9HMW|1|i2|U|47, 9HMW|1|i2|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9HMW_015 not in the Motif Atlas
- Homologous match to J4_5AXM_001
- Geometric discrepancy: 0.1945
- The information below is about J4_5AXM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
9HMW|1|i2|A|7
9HMW|1|i2|U|8
9HMW|1|i2|A|9
9HMW|1|i2|G|10
*
9HMW|1|i2|C|25
9HMW|1|i2|G|26
9HMW|1|i2|U|27
*
9HMW|1|i2|A|43
9HMW|1|i2|A|44
9HMW|1|i2|G|45
9HMW|1|i2|G|46
9HMW|1|i2|U|47
9HMW|1|i2|C|48
9HMW|1|i2|G|49
*
9HMW|1|i2|C|65
9HMW|1|i2|U|66
Current chains
- Chain i2
- Transfer RNA Phe (GAA)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain BJ
- Large ribosomal subunit protein uL16y
- Chain Pa
- Small ribosomal subunit protein eS30z/eS30y/eS30x
- Chain h1
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: