J4_9HQV_001
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GGAAGUGUG*UUAU*AGG*CC
- Length
- 18 nucleotides
- Bulged bases
- 9HQV|1|SB|G|432, 9HQV|1|SB|U|436, 9HQV|1|SC|U|6
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HQV|1|SB|G|431
9HQV|1|SB|G|432
9HQV|1|SB|A|433
9HQV|1|SB|A|434
9HQV|1|SB|G|435
9HQV|1|SB|U|436
9HQV|1|SB|G|437
9HQV|1|SB|U|438
9HQV|1|SB|G|439
*
9HQV|1|SC|U|5
9HQV|1|SC|U|6
9HQV|1|SC|A|7
9HQV|1|SC|U|8
*
9HQV|1|SD|A|13
9HQV|1|SD|G|14
9HQV|1|SD|G|15
*
9HQV|1|SD|C|40
9HQV|1|SD|C|41
Current chains
- Chain SB
- SSU-2
- Chain SC
- SSU-3
- Chain SD
- SSU-4
Nearby chains
- Chain Bh
- Putative 30S ribosomal protein S12
- Chain Bl
- Putative 30S ribosomal protein S16
- Chain Bm
- Putative ribosomal protein S17
- Chain Bx
- Mitochondrial mRNA-processing protein COX24 C-terminal domain-containing protein
- Chain SA
- SSU-1
- Chain SE
- SSU-5
- Chain Yc
- mS119
- Chain Yf
- Macro domain-containing protein
- Chain Yh
- mS124
Coloring options: