J4_9I14_002
3D structure
- PDB id
- 9I14 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- AUAG*CAGG*CCGUGUCC*GU
- Length
- 18 nucleotides
- Bulged bases
- 9I14|1|D4|U|8, 9I14|1|D4|U|47, 9I14|1|D4|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9I14_002 not in the Motif Atlas
- Homologous match to J4_5WWT_001
- Geometric discrepancy: 0.4724
- The information below is about J4_5WWT_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_65285.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9I14|1|D4|A|7
9I14|1|D4|U|8
9I14|1|D4|A|9
9I14|1|D4|G|10
*
9I14|1|D4|C|25
9I14|1|D4|A|26
9I14|1|D4|G|27
9I14|1|D4|G|28
*
9I14|1|D4|C|42
9I14|1|D4|C|43
9I14|1|D4|G|44
9I14|1|D4|U|45
9I14|1|D4|G|46
9I14|1|D4|U|47
9I14|1|D4|C|48
9I14|1|D4|C|49
*
9I14|1|D4|G|65
9I14|1|D4|U|66
Current chains
- Chain D4
- A/P tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- 60S ribosomal protein L10
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- 40S ribosomal protein S15
- Chain Se
- 40S ribosomal protein S30
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