J4_9I14_005

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

(OMC)AAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9I14|1|L5|A|2366, 9I14|1|L5|U|2369, 9I14|1|L5|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|L5|OMC|2365
9I14|1|L5|A|2366
9I14|1|L5|A|2367
9I14|1|L5|A|2368
9I14|1|L5|U|2369
9I14|1|L5|A|2370
9I14|1|L5|U|2371
*
9I14|1|L5|A|2389
9I14|1|L5|G|2390
9I14|1|L5|G|2391
*
9I14|1|L5|C|2824
9I14|1|L5|A|2825
9I14|1|L5|U|2826
9I14|1|L5|G|2827
9I14|1|L5|U|2828
9I14|1|L5|U|2829
*
9I14|1|L5|A|3856
9I14|1|L5|G|3857

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31