J4_9I14_009

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|L5|G|3634
9I14|1|L5|A|3635
9I14|1|L5|C|3636
9I14|1|L5|U|3637
9I14|1|L5|G|3638
*
9I14|1|L5|C|3650
9I14|1|L5|A|3651
9I14|1|L5|A|3652
9I14|1|L5|A|3653
9I14|1|L5|G|3654
*
9I14|1|L5|U|3690
9I14|1|L5|G|3691
9I14|1|L5|A|3692
9I14|1|L5|U|3693
9I14|1|L5|U|3694
*
9I14|1|L5|A|3821
9I14|1|L5|U|3822
9I14|1|L5|G|3823
9I14|1|L5|A|3824
9I14|1|L5|A2M|3825
9I14|1|L5|C|3826

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA