J4_9I14_010

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9I14|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9I14_010 not in the Motif Atlas

Homologous match to J4_9H3G_008

Geometric discrepancy: 0.1628

The information below is about J4_9H3G_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.3

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9I14|1|L5|C|3696
9I14|1|L5|U|3697
9I14|1|L5|G|3698
*
9I14|1|L5|C|3752
9I14|1|L5|G|3753
*
9I14|1|L5|C|3771
9I14|1|L5|U|3772
9I14|1|L5|U|3773
9I14|1|L5|A|3774
9I14|1|L5|A|3775
9I14|1|L5|G|3776
9I14|1|L5|G|3777
9I14|1|L5|U|3778
9I14|1|L5|A|3779
9I14|1|L5|G|3780
*
9I14|1|L5|U|3814
9I14|1|L5|G|3815
9I14|1|L5|A|3816
9I14|1|L5|A|3817
9I14|1|L5|U|3818
9I14|1|L5|G|3819

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain B4

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA