J4_9I2D_008

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9I2D|1|L5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2D|1|L5|G|2618
9I2D|1|L5|G|2619
*
9I2D|1|L5|U|2637
9I2D|1|L5|G|2638
9I2D|1|L5|U|2639
9I2D|1|L5|G|2640
9I2D|1|L5|A|2641
9I2D|1|L5|A|2642
*
9I2D|1|L5|U|2692
9I2D|1|L5|G|2693
9I2D|1|L5|G|2694
9I2D|1|L5|A|2695
9I2D|1|L5|A|2696
9I2D|1|L5|A|2697
9I2D|1|L5|G|2698
*
9I2D|1|L5|U|2718
9I2D|1|L5|C|2719

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38