J4_9I2D_009

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2D|1|L5|G|3634
9I2D|1|L5|A|3635
9I2D|1|L5|C|3636
9I2D|1|L5|U|3637
9I2D|1|L5|G|3638
*
9I2D|1|L5|C|3650
9I2D|1|L5|A|3651
9I2D|1|L5|A|3652
9I2D|1|L5|A|3653
9I2D|1|L5|G|3654
*
9I2D|1|L5|U|3690
9I2D|1|L5|G|3691
9I2D|1|L5|A|3692
9I2D|1|L5|U|3693
9I2D|1|L5|U|3694
*
9I2D|1|L5|A|3821
9I2D|1|L5|U|3822
9I2D|1|L5|G|3823
9I2D|1|L5|A|3824
9I2D|1|L5|A|3825
9I2D|1|L5|C|3826

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA