J4_9I89_003

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CAAG*CGUAG*CGAG*CGUUUAG

Length

20 nucleotides

Bulged bases

9I89|1|A|U|699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I89|1|A|C|644
9I89|1|A|A|645
9I89|1|A|A|646
9I89|1|A|G|647
*
9I89|1|A|C|669
9I89|1|A|G|670
9I89|1|A|U|671
9I89|1|A|A|672
9I89|1|A|G|673
*
9I89|1|A|C|680
9I89|1|A|G|681
9I89|1|A|A|682
9I89|1|A|G|683
*
9I89|1|A|C|695
9I89|1|A|G|696
9I89|1|A|U|697
9I89|1|A|U|698
9I89|1|A|U|699
9I89|1|A|A|700
9I89|1|A|G|701

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL35

Chain I

Large ribosomal subunit protein uL4

Chain O

Large ribosomal subunit protein uL15