J4_9I89_005

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

9I89|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I89|1|A|G|1347
9I89|1|A|U|1348
9I89|1|A|U|1349
9I89|1|A|U|1350
9I89|1|A|C|1351
*
9I89|1|A|G|1375
9I89|1|A|G|1376
9I89|1|A|U|1377
9I89|1|A|U|1378
9I89|1|A|A|1379
9I89|1|A|G|1380
*
9I89|1|A|C|1441
9I89|1|A|C|1442
*
9I89|1|A|G|1641
9I89|1|A|C|1642
9I89|1|A|C|1643
9I89|1|A|C|1644
9I89|1|A|G|1645
9I89|1|A|U|1646
9I89|1|A|A|1647
9I89|1|A|C|1648

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL34

Chain W

Large ribosomal subunit protein uL23