J4_9IOA_001
3D structure
- PDB id
- 9IOA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the tetrameric DRT9-ncRNA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UUCUA*UCUU*ACGGGG*CAACCAAGUGGUAACUUACUUUUACUUG
- Length
- 43 nucleotides
- Bulged bases
- 9IOA|1|B|G|80, 9IOA|1|B|A|110, 9IOA|1|B|U|120, 9IOA|1|B|U|124, 9IOA|1|B|U|130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9IOA|1|B|U|29
9IOA|1|B|U|30
9IOA|1|B|C|31
9IOA|1|B|U|32
9IOA|1|B|A|33
*
9IOA|1|B|U|52
9IOA|1|B|C|53
9IOA|1|B|U|54
9IOA|1|B|U|55
*
9IOA|1|B|A|78
9IOA|1|B|C|79
9IOA|1|B|G|80
9IOA|1|B|G|81
9IOA|1|B|G|82
9IOA|1|B|G|83
*
9IOA|1|B|C|104
9IOA|1|B|A|105
9IOA|1|B|A|106
9IOA|1|B|C|107
9IOA|1|B|C|108
9IOA|1|B|A|109
9IOA|1|B|A|110
9IOA|1|B|G|111
9IOA|1|B|U|112
9IOA|1|B|G|113
9IOA|1|B|G|114
9IOA|1|B|U|115
9IOA|1|B|A|116
9IOA|1|B|A|117
9IOA|1|B|C|118
9IOA|1|B|U|119
9IOA|1|B|U|120
9IOA|1|B|A|121
9IOA|1|B|C|122
9IOA|1|B|U|123
9IOA|1|B|U|124
9IOA|1|B|U|125
9IOA|1|B|U|126
9IOA|1|B|A|127
9IOA|1|B|C|128
9IOA|1|B|U|129
9IOA|1|B|U|130
9IOA|1|B|G|131
Current chains
- Chain B
- RNA (177-MER)
Nearby chains
- Chain A
- RNA-dependent DNA polymerase
- Chain C
- RNA-dependent DNA polymerase
- Chain F
- RNA (177-MER)
Coloring options: