J4_9IOT_001

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9IOT|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9IOT|1|A|C|268
9IOT|1|A|C|269
*
9IOT|1|A|G|370
9IOT|1|A|A|371
9IOT|1|A|G|372
9IOT|1|A|U|373
9IOT|1|A|A|374
9IOT|1|A|G|375
*
9IOT|1|A|U|399
9IOT|1|A|G|400
9IOT|1|A|A|401
9IOT|1|A|A|402
9IOT|1|A|U|403
9IOT|1|A|A|404
9IOT|1|A|U|405
9IOT|1|A|G|406
*
9IOT|1|A|C|421
9IOT|1|A|A|422
9IOT|1|A|A|423
9IOT|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

Large ribosomal subunit protein bL9

Chain Z

Large ribosomal subunit protein bL28