J4_9IOT_002

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9IOT|1|A|G|297
9IOT|1|A|G|298
9IOT|1|A|A|299
9IOT|1|A|A|300
9IOT|1|A|G|301
*
9IOT|1|A|C|316
9IOT|1|A|G|317
9IOT|1|A|C|318
9IOT|1|A|G|319
*
9IOT|1|A|C|323
9IOT|1|A|A|324
9IOT|1|A|G|325
*
9IOT|1|A|C|337
9IOT|1|A|G|338
9IOT|1|A|U|339
9IOT|1|A|A|340
9IOT|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain W

Large ribosomal subunit protein uL24