J4_9IOT_004

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9IOT|1|A|G|1271, 9IOT|1|A|A|1272, 9IOT|1|A|U|1273, 9IOT|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9IOT|1|A|C|1270
9IOT|1|A|G|1271
9IOT|1|A|A|1272
9IOT|1|A|U|1273
9IOT|1|A|A|1274
9IOT|1|A|A|1275
9IOT|1|A|A|1276
*
9IOT|1|A|U|1294
9IOT|1|A|C|1295
*
9IOT|1|A|G|1645
9IOT|1|A|C|1646
9IOT|1|A|U|1647
9IOT|1|A|U|1648
*
9IOT|1|A|A|2009
9IOT|1|A|G|2010

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL32

Chain P

Large ribosomal subunit protein bL17

Chain U

50S ribosomal protein L22