J4_9IOT_008

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9IOT|1|A|A|1772
9IOT|1|A|A|1773
9IOT|1|A|C|1774
9IOT|1|A|U|1775
9IOT|1|A|G|1776
*
9IOT|1|A|C|1788
9IOT|1|A|A|1789
9IOT|1|A|C|1790
9IOT|1|A|A|1791
9IOT|1|A|G|1792
*
9IOT|1|A|U|1827
9IOT|1|A|G|1828
9IOT|1|A|A|1829
9IOT|1|A|C|1830
*
9IOT|1|A|G|1975
9IOT|1|A|U|1976
9IOT|1|A|A|1977
9IOT|1|A|A|1978
9IOT|1|A|U|1979

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2