J4_9IOT_009

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9IOT|1|A|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9IOT_009 not in the Motif Atlas

Homologous match to J4_8B0X_012

Geometric discrepancy: 0.0363

The information below is about J4_8B0X_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.3

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9IOT|1|A|C|1833
9IOT|1|A|U|1834
9IOT|1|A|2MG|1835
*
9IOT|1|A|C|1905
9IOT|1|A|G|1906
*
9IOT|1|A|C|1924
9IOT|1|A|C|1925
9IOT|1|A|U|1926
9IOT|1|A|A|1927
9IOT|1|A|A|1928
9IOT|1|A|G|1929
9IOT|1|A|G|1930
9IOT|1|A|U|1931
9IOT|1|A|A|1932
9IOT|1|A|G|1933
*
9IOT|1|A|C|1967
9IOT|1|A|G|1968
9IOT|1|A|A|1969
9IOT|1|A|A|1970
9IOT|1|A|U|1971
9IOT|1|A|G|1972

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA