J4_9IOT_012

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9IOT|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9IOT|1|a|G|115
9IOT|1|a|A|116
9IOT|1|a|G|117
9IOT|1|a|U|118
9IOT|1|a|A|119
9IOT|1|a|A|120
9IOT|1|a|U|121
9IOT|1|a|G|122
*
9IOT|1|a|U|239
9IOT|1|a|G|240
*
9IOT|1|a|C|286
9IOT|1|a|U|287
9IOT|1|a|A|288
9IOT|1|a|G|289
*
9IOT|1|a|C|311
9IOT|1|a|C|312

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16

Chain q

Small ribosomal subunit protein uS17