J4_9IOT_013

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAGGG*CGCAUAACG*CCAAAG*UGC

Length

23 nucleotides

Bulged bases

9IOT|1|a|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9IOT|1|a|G|142
9IOT|1|a|A|143
9IOT|1|a|G|144
9IOT|1|a|G|145
9IOT|1|a|G|146
*
9IOT|1|a|C|176
9IOT|1|a|G|177
9IOT|1|a|C|178
9IOT|1|a|A|179
9IOT|1|a|U|180
9IOT|1|a|A|181
9IOT|1|a|A|182
9IOT|1|a|C|183
9IOT|1|a|G|184
*
9IOT|1|a|C|193
9IOT|1|a|C|194
9IOT|1|a|A|195
9IOT|1|a|A|196
9IOT|1|a|A|197
9IOT|1|a|G|198
*
9IOT|1|a|U|219
9IOT|1|a|G|220
9IOT|1|a|C|221

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

Small ribosomal subunit protein bS20