J4_9IOT_014
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9IOT|1|a|C|576, 9IOT|1|a|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9IOT|1|a|G|575
9IOT|1|a|C|576
9IOT|1|a|G|577
*
9IOT|1|a|C|764
9IOT|1|a|G|765
9IOT|1|a|A|766
9IOT|1|a|A|767
9IOT|1|a|A|768
9IOT|1|a|G|769
*
9IOT|1|a|C|810
9IOT|1|a|C|811
9IOT|1|a|G|812
9IOT|1|a|U|813
9IOT|1|a|A|814
9IOT|1|a|A|815
9IOT|1|a|A|816
9IOT|1|a|C|817
9IOT|1|a|G|818
9IOT|1|a|A|819
9IOT|1|a|U|820
9IOT|1|a|G|821
*
9IOT|1|a|C|879
9IOT|1|a|C|880
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain h
- Small ribosomal subunit protein uS8
- Chain l
- Small ribosomal subunit protein uS12
- Chain o
- Small ribosomal subunit protein uS15
- Chain q
- Small ribosomal subunit protein uS17
- Chain u
- 30S ribosomal protein S21
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