J4_9J1M_002

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGAAG*UGCC*GAC*GGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9J1M_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1296

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9J1M|1|A|G|379
9J1M|1|A|G|380
9J1M|1|A|A|381
9J1M|1|A|A|382
9J1M|1|A|G|383
*
9J1M|1|A|U|399
9J1M|1|A|G|400
9J1M|1|A|C|401
9J1M|1|A|C|402
*
9J1M|1|A|G|406
9J1M|1|A|A|407
9J1M|1|A|C|408
*
9J1M|1|A|G|420
9J1M|1|A|G|421
9J1M|1|A|U|422
9J1M|1|A|A|423
9J1M|1|A|C|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24