J4_9J1M_003
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CGACAAG*CC*GUAC*GG
- Length
- 15 nucleotides
- Bulged bases
- 9J1M|1|A|G|1402, 9J1M|1|A|A|1403, 9J1M|1|A|C|1404, 9J1M|1|A|A|1405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9J1M_003 not in the Motif Atlas
- Homologous match to J4_9DFE_003
- Geometric discrepancy: 0.4152
- The information below is about J4_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9J1M|1|A|C|1401
9J1M|1|A|G|1402
9J1M|1|A|A|1403
9J1M|1|A|C|1404
9J1M|1|A|A|1405
9J1M|1|A|A|1406
9J1M|1|A|G|1407
*
9J1M|1|A|C|1425
9J1M|1|A|C|1426
*
9J1M|1|A|G|1880
9J1M|1|A|U|1881
9J1M|1|A|A|1882
9J1M|1|A|C|1883
*
9J1M|1|A|G|2247
9J1M|1|A|G|2248
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32
- Chain N
- Large ribosomal subunit protein bL17
- Chain S
- Large ribosomal subunit protein uL22
Coloring options: