J4_9J1M_007

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9J1M|1|A|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9J1M_007 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0664

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9J1M|1|A|C|2067
9J1M|1|A|U|2068
9J1M|1|A|G|2069
*
9J1M|1|A|C|2143
9J1M|1|A|G|2144
*
9J1M|1|A|C|2162
9J1M|1|A|C|2163
9J1M|1|A|U|2164
9J1M|1|A|A|2165
9J1M|1|A|A|2166
9J1M|1|A|G|2167
9J1M|1|A|G|2168
9J1M|1|A|U|2169
9J1M|1|A|A|2170
9J1M|1|A|G|2171
*
9J1M|1|A|C|2205
9J1M|1|A|G|2206
9J1M|1|A|A|2207
9J1M|1|A|A|2208
9J1M|1|A|U|2209
9J1M|1|A|G|2210

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain x

Mitochondrial domain of uncharacterised function (DUF1713)