J4_9JPO_010

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9JPO|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9JPO|1|a|G|1310
9JPO|1|a|G|1311
9JPO|1|a|U|1312
9JPO|1|a|U|1313
9JPO|1|a|C|1314
*
9JPO|1|a|G|1338
9JPO|1|a|G|1339
9JPO|1|a|U|1340
9JPO|1|a|G|1341
9JPO|1|a|A|1342
9JPO|1|a|G|1343
*
9JPO|1|a|C|1404
9JPO|1|a|U|1405
*
9JPO|1|a|A|1597
9JPO|1|a|A|1598
9JPO|1|a|U|1599
9JPO|1|a|C|1600
9JPO|1|a|G|1601
9JPO|1|a|U|1602
9JPO|1|a|A|1603
9JPO|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23