J4_9JPP_005
3D structure
- PDB id
- 9JPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9JPP|1|Z|4SU|8, 9JPP|1|Z|U|48, 9JPP|1|Z|C|49
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9JPP_005 not in the Motif Atlas
- Homologous match to J4_6CFJ_015
- Geometric discrepancy: 0.1444
- The information below is about J4_6CFJ_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
9JPP|1|Z|G|7
9JPP|1|Z|4SU|8
9JPP|1|Z|G|9
9JPP|1|Z|G|10
*
9JPP|1|Z|C|26
9JPP|1|Z|G|27
9JPP|1|Z|U|28
*
9JPP|1|Z|A|44
9JPP|1|Z|A|45
9JPP|1|Z|G|46
9JPP|1|Z|A|47
9JPP|1|Z|U|48
9JPP|1|Z|C|49
9JPP|1|Z|G|50
*
9JPP|1|Z|C|66
9JPP|1|Z|C|67
Current chains
- Chain Z
- P-site tRNA-fMet
Nearby chains
- Chain M
- 30S ribosomal protein S13
- Chain V
- Transfer RNA; tRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
Coloring options: