J4_9JPP_010

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9JPP|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9JPP|1|a|G|1310
9JPP|1|a|G|1311
9JPP|1|a|U|1312
9JPP|1|a|U|1313
9JPP|1|a|C|1314
*
9JPP|1|a|G|1338
9JPP|1|a|G|1339
9JPP|1|a|U|1340
9JPP|1|a|G|1341
9JPP|1|a|A|1342
9JPP|1|a|G|1343
*
9JPP|1|a|C|1404
9JPP|1|a|U|1405
*
9JPP|1|a|A|1597
9JPP|1|a|A|1598
9JPP|1|a|U|1599
9JPP|1|a|C|1600
9JPP|1|a|G|1601
9JPP|1|a|U|1602
9JPP|1|a|A|1603
9JPP|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23