J4_9K0Z_012

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9K0Z|1|h|U|2195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K0Z|1|h|C|2050
9K0Z|1|h|U|2051
9K0Z|1|h|G|2052
*
9K0Z|1|h|C|2129
9K0Z|1|h|G|2130
*
9K0Z|1|h|C|2148
9K0Z|1|h|C|2149
9K0Z|1|h|U|2150
9K0Z|1|h|A|2151
9K0Z|1|h|A|2152
9K0Z|1|h|G|2153
9K0Z|1|h|G|2154
9K0Z|1|h|U|2155
9K0Z|1|h|A|2156
9K0Z|1|h|G|2157
*
9K0Z|1|h|C|2191
9K0Z|1|h|G|2192
9K0Z|1|h|A|2193
9K0Z|1|h|A|2194
9K0Z|1|h|U|2195
9K0Z|1|h|G|2196

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain i

Large ribosomal subunit protein uL2