J4_9K10_003

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUUAG*CC*GUAC*GG

Length

15 nucleotides

Bulged bases

9K10|1|A|G|1386, 9K10|1|A|U|1389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K10|1|A|C|1385
9K10|1|A|G|1386
9K10|1|A|A|1387
9K10|1|A|U|1388
9K10|1|A|U|1389
9K10|1|A|A|1390
9K10|1|A|G|1391
*
9K10|1|A|C|1409
9K10|1|A|C|1410
*
9K10|1|A|G|1863
9K10|1|A|U|1864
9K10|1|A|A|1865
9K10|1|A|C|1866
*
9K10|1|A|G|2233
9K10|1|A|G|2234

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22

Chain b

50S ribosomal protein L32