J4_9K10_007

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K10|1|A|G|1989
9K10|1|A|A|1990
9K10|1|A|C|1991
9K10|1|A|U|1992
9K10|1|A|G|1993
*
9K10|1|A|C|2005
9K10|1|A|A|2006
9K10|1|A|C|2007
9K10|1|A|A|2008
9K10|1|A|G|2009
*
9K10|1|A|U|2044
9K10|1|A|G|2045
9K10|1|A|A|2046
9K10|1|A|C|2047
*
9K10|1|A|G|2199
9K10|1|A|U|2200
9K10|1|A|A|2201
9K10|1|A|A|2202
9K10|1|A|C|2203

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2