J4_9K10_008

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9K10|1|A|C|2509
9K10|1|A|A|2510
9K10|1|A|A|2511
9K10|1|A|A|2512
9K10|1|A|G|2513
*
9K10|1|A|U|2567
9K10|1|A|U|2568
9K10|1|A|G|2569
9K10|1|A|A|2570
9K10|1|A|C|2571
*
9K10|1|A|G|2594
9K10|1|A|G|2595
9K10|1|A|G|2596
*
9K10|1|A|C|2605
9K10|1|A|G|2606
9K10|1|A|G|2607

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L18

Chain X

50S ribosomal protein L27

Chain c

50S ribosomal protein L33 1

Chain e

50S ribosomal protein L35