J4_9KDT_001

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

9KDT|1|L5|C|308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|C|111
9KDT|1|L5|C|112
*
9KDT|1|L5|G|277
9KDT|1|L5|A|278
9KDT|1|L5|G|279
9KDT|1|L5|U|280
9KDT|1|L5|C|281
9KDT|1|L5|G|282
*
9KDT|1|L5|C|303
9KDT|1|L5|A|304
9KDT|1|L5|A|305
9KDT|1|L5|A|306
9KDT|1|L5|G|307
9KDT|1|L5|C|308
9KDT|1|L5|G|309
*
9KDT|1|L5|U|326
9KDT|1|L5|A|327
9KDT|1|L5|A|328
9KDT|1|L5|G|329

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain LN

Large ribosomal subunit protein eL15

Chain Lh

Large ribosomal subunit protein uL29

Chain Li

Large ribosomal subunit protein eL36