J4_9KDT_003

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9KDT|1|L5|A|2123, 9KDT|1|L5|U|2126, 9KDT|1|L5|U|2582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|C|2122
9KDT|1|L5|A|2123
9KDT|1|L5|A|2124
9KDT|1|L5|A|2125
9KDT|1|L5|U|2126
9KDT|1|L5|A|2127
9KDT|1|L5|U|2128
*
9KDT|1|L5|A|2146
9KDT|1|L5|G|2147
9KDT|1|L5|G|2148
*
9KDT|1|L5|C|2578
9KDT|1|L5|A|2579
9KDT|1|L5|U|2580
9KDT|1|L5|G|2581
9KDT|1|L5|U|2582
9KDT|1|L5|U|2583
*
9KDT|1|L5|A|3513
9KDT|1|L5|G|3514

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LP

Large ribosomal subunit protein uL22

Chain LR

Large ribosomal subunit protein eL19

Chain Ld

Large ribosomal subunit protein eL31