J4_9KDT_004
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9KDT|1|L5|C|2194
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|L5|G|2163
9KDT|1|L5|G|2164
9KDT|1|L5|U|2165
9KDT|1|L5|U|2166
9KDT|1|L5|C|2167
*
9KDT|1|L5|G|2191
9KDT|1|L5|G|2192
9KDT|1|L5|U|2193
9KDT|1|L5|C|2194
9KDT|1|L5|A|2195
9KDT|1|L5|G|2196
*
9KDT|1|L5|U|2295
9KDT|1|L5|C|2296
*
9KDT|1|L5|G|2531
9KDT|1|L5|G|2532
9KDT|1|L5|C|2533
9KDT|1|L5|C|2534
9KDT|1|L5|G|2535
9KDT|1|L5|U|2536
9KDT|1|L5|A|2537
9KDT|1|L5|C|2538
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LR
- Large ribosomal subunit protein eL19
- Chain LX
- Large ribosomal subunit protein uL23
- Chain Lg
- Large ribosomal subunit protein eL34
- Chain Lj
- Large ribosomal subunit protein eL37
- Chain Lk
- Large ribosomal subunit protein eL38
- Chain Ll
- Large ribosomal subunit protein eL39-like
Coloring options: