J4_9KDT_005
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AGAUGG*CGUUC*GAAGGG*CGGCCGAU
- Length
- 25 nucleotides
- Bulged bases
- 9KDT|1|L5|A|2229, 9KDT|1|L5|G|2232, 9KDT|1|L5|G|2260, 9KDT|1|L5|C|2261
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|L5|A|2208
9KDT|1|L5|G|2209
9KDT|1|L5|A|2210
9KDT|1|L5|U|2211
9KDT|1|L5|G|2212
9KDT|1|L5|G|2213
*
9KDT|1|L5|C|2222
9KDT|1|L5|G|2223
9KDT|1|L5|U|2224
9KDT|1|L5|U|2225
9KDT|1|L5|C|2226
*
9KDT|1|L5|G|2228
9KDT|1|L5|A|2229
9KDT|1|L5|A|2230
9KDT|1|L5|G|2231
9KDT|1|L5|G|2232
9KDT|1|L5|G|2233
*
9KDT|1|L5|C|2258
9KDT|1|L5|G|2259
9KDT|1|L5|G|2260
9KDT|1|L5|C|2261
9KDT|1|L5|C|2262
9KDT|1|L5|G|2263
9KDT|1|L5|A|2264
9KDT|1|L5|U|2265
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- Large ribosomal subunit protein uL2
- Chain LG
- Large ribosomal subunit protein eL8
- Chain LN
- Large ribosomal subunit protein eL15
- Chain LX
- Large ribosomal subunit protein uL23
- Chain Lj
- Large ribosomal subunit protein eL37
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