J4_9KDT_006

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

9KDT|1|L5|A|2450

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|G|2372
9KDT|1|L5|G|2373
*
9KDT|1|L5|U|2391
9KDT|1|L5|G|2392
9KDT|1|L5|U|2393
9KDT|1|L5|G|2394
9KDT|1|L5|A|2395
9KDT|1|L5|A|2396
*
9KDT|1|L5|U|2446
9KDT|1|L5|G|2447
9KDT|1|L5|G|2448
9KDT|1|L5|A|2449
9KDT|1|L5|A|2450
9KDT|1|L5|A|2451
9KDT|1|L5|G|2452
*
9KDT|1|L5|U|2472
9KDT|1|L5|C|2473

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19

Chain LU

Large ribosomal subunit protein eL22

Chain Lg

Large ribosomal subunit protein eL34

Chain Lk

Large ribosomal subunit protein eL38