J4_9KDT_007

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|G|3291
9KDT|1|L5|A|3292
9KDT|1|L5|C|3293
9KDT|1|L5|U|3294
9KDT|1|L5|G|3295
*
9KDT|1|L5|C|3307
9KDT|1|L5|A|3308
9KDT|1|L5|A|3309
9KDT|1|L5|A|3310
9KDT|1|L5|G|3311
*
9KDT|1|L5|U|3347
9KDT|1|L5|G|3348
9KDT|1|L5|A|3349
9KDT|1|L5|U|3350
9KDT|1|L5|U|3351
*
9KDT|1|L5|A|3478
9KDT|1|L5|U|3479
9KDT|1|L5|G|3480
9KDT|1|L5|A|3481
9KDT|1|L5|A|3482
9KDT|1|L5|C|3483

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Ln

Small ribosomal subunit protein eS32

Chain Lp

Large ribosomal subunit protein eL43

Chain S2

Small subunit ribosomal RNA; SSU rRNA