J4_9KDT_008

3D structure

PDB id

9KDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9KDT|1|L5|U|3475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDT|1|L5|C|3353
9KDT|1|L5|U|3354
9KDT|1|L5|G|3355
*
9KDT|1|L5|C|3409
9KDT|1|L5|G|3410
*
9KDT|1|L5|C|3428
9KDT|1|L5|U|3429
9KDT|1|L5|U|3430
9KDT|1|L5|A|3431
9KDT|1|L5|A|3432
9KDT|1|L5|G|3433
9KDT|1|L5|G|3434
9KDT|1|L5|U|3435
9KDT|1|L5|A|3436
9KDT|1|L5|G|3437
*
9KDT|1|L5|U|3471
9KDT|1|L5|G|3472
9KDT|1|L5|A|3473
9KDT|1|L5|A|3474
9KDT|1|L5|U|3475
9KDT|1|L5|G|3476

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2

Chain Ln

Small ribosomal subunit protein eS32

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain S7

Transfer RNA; tRNA