J4_9KDT_012
3D structure
- PDB id
- 9KDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9KDT|1|S2|A|673, 9KDT|1|S2|A|1084
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDT|1|S2|A|672
9KDT|1|S2|A|673
9KDT|1|S2|G|674
*
9KDT|1|S2|C|1033
9KDT|1|S2|G|1034
9KDT|1|S2|A|1035
9KDT|1|S2|A|1036
9KDT|1|S2|A|1037
9KDT|1|S2|G|1038
*
9KDT|1|S2|C|1079
9KDT|1|S2|C|1080
9KDT|1|S2|A|1081
9KDT|1|S2|U|1082
9KDT|1|S2|A|1083
9KDT|1|S2|A|1084
9KDT|1|S2|A|1085
9KDT|1|S2|C|1086
9KDT|1|S2|G|1087
9KDT|1|S2|A|1088
9KDT|1|S2|U|1089
9KDT|1|S2|G|1090
*
9KDT|1|S2|U|1161
9KDT|1|S2|U|1162
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain Ln
- Small ribosomal subunit protein eS32
- Chain Lp
- Large ribosomal subunit protein eL43
- Chain SL
- Small ribosomal subunit protein uS17
- Chain SN
- Small ribosomal subunit protein uS15
- Chain SO
- Small ribosomal subunit protein uS11
- Chain SW
- Small ribosomal subunit protein uS8
- Chain SX
- Small ribosomal subunit protein uS12
- Chain Sa
- Small ribosomal subunit protein eS26
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