J4_9KDU_002

3D structure

PDB id

9KDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9KDU|1|L5|C|216, 9KDU|1|L5|C|217, 9KDU|1|L5|A|218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDU|1|L5|C|196
9KDU|1|L5|A|197
9KDU|1|L5|A|198
9KDU|1|L5|G|199
*
9KDU|1|L5|C|215
9KDU|1|L5|C|216
9KDU|1|L5|C|217
9KDU|1|L5|A|218
9KDU|1|L5|G|219
9KDU|1|L5|C|220
9KDU|1|L5|C|221
9KDU|1|L5|C|222
*
9KDU|1|L5|G|226
9KDU|1|L5|A|227
9KDU|1|L5|C|228
*
9KDU|1|L5|G|240
9KDU|1|L5|G|241
9KDU|1|L5|U|242
9KDU|1|L5|A|243
9KDU|1|L5|G|244

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LY

Large ribosomal subunit protein uL24